そのようなファイルが多く、メモリ消費が最も高いものが何であるかを知りたいです（Mem）。
$ cat utg006012l-racon-2.fasta.o5230935
[racon::Polisher::initialize] loaded target sequences 0.013133 s
[racon::Polisher::initialize] loaded sequences 6.667809 s
[racon::Polisher::initialize] loaded overlaps 6.267742 s
[racon::Polisher::initialize] aligning overlaps [=> ] 8.633518 s^M[racon::Polisher::initialize] aligning overlaps [==> ] 9.058757 s^M[racon::Polisher::initialize] aligning overlaps [===> ] 9.490215 s^M[racon::Polisher::initialize] aligning overlaps [====> ] 9.760396 s^M[racon::Polisher::initialize] aligning overlaps [=====> ] 10.008019 s^M[racon::Polisher::initialize] aligning overlaps [======> ] 10.332580 s^M[racon::Polisher::initialize] aligning overlaps [=======> ] 10.681680 s^M[racon::Polisher::initialize] aligning overlaps [========> ] 11.022209 s^M[racon::Polisher::initialize] aligning overlaps [=========> ] 11.350026 s^M[racon::Polisher::initialize] aligning overlaps [==========> ] 11.675731 s^M[racon::Polisher::initialize] aligning overlaps [===========> ] 12.004713 s^M[racon::Polisher::initialize] aligning overlaps [============> ] 12.330591 s^M[racon::Polisher::initialize] aligning overlaps [=============> ] 12.650907 s^M[racon::Polisher::initialize] aligning overlaps [==============> ] 12.965631 s^M[racon::Polisher::initialize] aligning overlaps [===============> ] 13.271211 s^M[racon::Polisher::initialize] aligning overlaps [================> ] 13.553430 s^M[racon::Polisher::initialize] aligning overlaps [=================> ] 13.825148 s^M[racon::Polisher::initialize] aligning overlaps [==================> ] 14.088558 s^M[racon::Polisher::initialize] aligning overlaps [===================>] 14.350089 s^M[racon::Polisher::initialize] aligning overlaps [====================] 14.598578 s
[racon::Polisher::initialize] transformed data into windows 0.542441 s
[racon::Polisher::polish] generated consensus 11154.363114 s
[racon::Polisher::] total = 11183.003787 s
-----
PBS Job 5230935.pbs
CPU time : 03:05:52
Wall time : 03:06:38
Mem usage : 4960216kb
使用しましたが、grep "Mem" *-racon-2.fasta.o* | cut -d':' -f3 | sed 's|kb||'| sed 's|b||' |awk '{print $1}' | sort出力がソートされていません。
582384
5832
5832
584004
584552
584928
585008
585144
585416
586164
586252
587792
588196
588852
589204
58992
590336
590704
591184
592112
5928
5932
593700
59420
59476
595128
595696
596356
5968
59696
597772
599356
59972
6012
60300
6032
60404
604240
60528
6064
606544
607448
608080
私が逃したものは何ですか？
事前にありがとう
答え1
cut -d':' -f3:行から3番目に区切られたフィールドを抽出しますが、それを適用する行は次のとおりです。
Mem usage : 4960216kb
つまり、フィールドは2つしかありません。
Mem usageと4960216kb。
長いパイプを避けるには、次のものを使用できます。
sed -n '/^Mem/s/[^[:digit:]]*//gp' *-racon-2.fasta.o* | sort -n
これは、単一のsed呼び出しを使用して文字列で始まる行を抽出し、数字ではMemなく行のすべての項目を削除して数字を切り捨てます。次に、抽出された数字を渡してsort -n数字で並べ替えます。
これは次のとおりです。
grep '^Mem' *-racon-2.fasta.o* | tr -d -c '[:digit:]\n' | sort -n